Fall is in the air, and there’s no better way to embrace the cozy season than with the comforting aroma of freshly baked pumpkin cookies filling your home. These Paleo Pumpkin Cookies with Chocolate Chips are not just any cookies; they are a delightful, guilt-free indulgence, meticulously crafted to be grain-free, dairy-free, and naturally sweetened. Imagine soft, chewy cookies bursting with fresh pumpkin flavor, perfectly spiced with warm autumn notes, and studded with rich, dairy-free chocolate chips. This recipe is a true celebration of fall, offering a healthier twist on a classic treat that everyone can enjoy.
Whether you follow a paleo lifestyle, have dietary restrictions, or simply seek a wholesome yet incredibly delicious dessert, these pumpkin cookies are an absolute must-try. They offer that perfect balance of sweetness and spice, creating a comforting experience with every bite. Unlike many traditional cookie recipes that rely on refined flours and sugars, our paleo version uses nutrient-dense ingredients that support a balanced diet without compromising on flavor or texture. Prepare to impress your friends and family with these irresistible, healthy pumpkin delights!

Why You’ll Love These Paleo Pumpkin Cookies
Beyond their incredible taste, these paleo pumpkin cookies offer a host of benefits that make them a standout recipe for healthy fall baking. Here’s why they’ll quickly become a staple in your kitchen:
- Grain-Free and Gluten-Free: Made with a thoughtful blend of almond and coconut flour, these cookies are perfect for those avoiding grains or following a gluten-free diet. This also makes them naturally lighter and easier to digest.
- Dairy-Free: By using palm shortening and dairy-free chocolate chips, we ensure these cookies are completely free of dairy, making them suitable for individuals with lactose intolerance or dairy allergies.
- Naturally Sweetened: Coconut sugar provides a delightful caramel-like sweetness with a lower glycemic index compared to refined sugars, offering a more stable energy release.
- Packed with Real Pumpkin: Fresh pumpkin puree lends a beautiful color, incredible moisture, and a boost of essential vitamins and antioxidants, particularly Vitamin A.
- Perfect Fall Flavors: A harmonious blend of cinnamon, nutmeg, and cloves evokes the classic taste of autumn, making these cookies the quintessential seasonal treat.
- Soft and Chewy Texture: Despite being grain-free, these cookies boast a wonderfully soft, moist, and slightly chewy texture that will satisfy any cookie craving.
- Easy to Make: With straightforward instructions and readily available ingredients, even novice bakers can achieve perfect results.
These cookies aren’t just a dessert; they’re a wholesome treat that fits perfectly into a healthy lifestyle. They are fantastic for lunchboxes, after-school snacks, or a comforting treat alongside a warm cup of coffee or tea.
Essential Ingredients for Your Paleo Pumpkin Cookies
Crafting these delectable paleo pumpkin cookies requires a few key ingredients, each playing a vital role in achieving their perfect flavor and texture. Choosing high-quality ingredients will elevate your baking experience and ensure the best possible outcome. Here’s a detailed look at what you’ll need:

- Pure Pumpkin Puree: This is the star of our show! It’s crucial to use 100% pure pumpkin puree, not pumpkin pie filling. Pumpkin pie filling contains added sugars, spices, and thickeners that will alter the sweetness and consistency of your cookies. Look for cans labeled “100% Pure Pumpkin” with only one ingredient: pumpkin. Beyond its rich flavor, pumpkin adds incredible moisture and a healthy dose of Vitamin A.
- Coconut Sugar: Our preferred natural sweetener. Coconut sugar has a lovely caramel-like flavor and a granular texture similar to brown sugar, making it an excellent alternative to refined white sugar. It also has a slightly lower glycemic index, which means it causes a slower rise in blood sugar. If you don’t have coconut sugar, you can use regular brown sugar if you’re not strictly paleo, though it will change the overall profile slightly.
- Organic Palm Shortening: This healthy fat is key to achieving the soft, tender texture of these cookies while keeping them dairy-free. Organic palm shortening is a solid fat at room temperature, similar to butter, and helps create a rich mouthfeel. It is a healthier option compared to conventional hydrogenated shortenings. If you are not strictly dairy-free, grass-fed butter can also be used, but the texture may be slightly different.
- Coconut Oil (Softened): A small amount of softened coconut oil contributes to the overall moisture and helps create the perfect cookie consistency. Ensure it’s softened, not melted, to blend smoothly with the other wet ingredients.
- Large Eggs: Eggs act as a binder, providing structure and richness to the cookies. They also contribute to the moist texture.
- Vanilla Extract: A classic flavor enhancer that complements the pumpkin and spices beautifully. Use pure vanilla extract for the best flavor.
- Almond Flour: This finely ground flour from blanched almonds is a staple in paleo baking. It provides a tender crumb and a rich flavor. For best results, use blanched superfine almond flour.
- Coconut Flour: A highly absorbent grain-free flour that helps bind the ingredients and adds a subtle sweetness. Coconut flour is very dense, so a small amount goes a long way. The combination of almond and coconut flour is crucial for the perfect texture in this recipe; do not substitute one for the other entirely.
- Ground Cinnamon, Nutmeg, and Cloves: These warm spices are essential for that signature fall pumpkin flavor. They create a fragrant and inviting aroma that makes these cookies truly special. You can also use a pre-made pumpkin pie spice blend if you prefer, usually around 1.5 to 2 teaspoons for this recipe.
- Kosher Salt: A pinch of salt balances the sweetness and enhances all the other flavors. Don’t skip it!
- Baking Soda: This leavening agent helps the cookies rise slightly and contributes to their soft texture.
- Dairy-Free Chocolate Chips: The perfect companion to pumpkin! Choose a high-quality dairy-free brand like Enjoy Life Foods to ensure your cookies remain completely dairy-free. Dark chocolate chips are often naturally dairy-free, but always check the ingredients label. You can also chop a dairy-free chocolate bar for larger chunks.
Gathering these ingredients will set you up for success in baking a batch of truly extraordinary paleo pumpkin cookies that are both wholesome and incredibly satisfying.
Step-by-Step Guide: Crafting Your Paleo Pumpkin Cookies
Making these paleo pumpkin cookies is a straightforward process, designed for ease and delicious results. Follow these detailed steps to bake a perfect batch of soft, spiced, and chocolate-studded treats.

- Prepare Your Workspace and Preheat Oven: Begin by preheating your oven to 350°F (175°C). Line a large baking sheet with parchment paper or a silicone baking mat. This prevents sticking and makes for easy cleanup. Having everything ready beforehand ensures a smooth baking process.
- Cream the Fats and Sugar: In the bowl of a stand mixer fitted with the paddle attachment, or using a hand mixer, combine the organic palm shortening, softened coconut oil, and coconut sugar. Beat these ingredients together on medium speed until the mixture is light, fluffy, and well combined. This creaming process incorporates air, which contributes to the cookies’ soft texture. Scrape down the sides of the bowl as needed to ensure even mixing.
- Incorporate Wet Ingredients: Add the pure pumpkin puree to the creamed mixture and blend until smooth and fully incorporated. Then, add the eggs, one at a time, mixing well after each addition until just combined. Finally, stir in the vanilla extract. Be careful not to overmix at this stage; just blend until everything is homogenous.
- Combine Dry Ingredients: In a separate medium bowl, whisk together the almond flour, coconut flour, ground cinnamon, ground nutmeg, ground cloves, kosher salt, and baking soda. If your almond or coconut flour tends to be lumpy (which is common), it’s a good idea to sift them together before adding them to the wet ingredients. This ensures there are no pockets of dry flour in your cookies.
- Add Dry to Wet: Gradually add the dry ingredient mixture to the wet ingredients in the mixer bowl. Mix on low speed until just combined. Be careful not to overmix the dough, as this can lead to tougher cookies. The dough will appear wet and soft, which is normal for grain-free cookies.
- Fold in Chocolate Chips: Remove the bowl from the mixer and, using a wooden spoon or a sturdy spatula, gently fold in the dairy-free chocolate chips until they are evenly distributed throughout the dough.
- Scoop and Flatten the Dough: The dough for these cookies is quite soft and won’t spread much on its own during baking. Use a cookie scoop (about 1.5 tablespoons) to portion the dough onto the prepared baking sheet, leaving about 2 inches between each cookie. Then, lightly moisten your fingers with water and gently flatten each cookie dough mound into a disc. This crucial step helps them achieve that perfect cookie shape and ensures even baking.
- Bake to Perfection: Transfer the baking sheet to the preheated oven and bake for 9-11 minutes, or until the edges are lightly golden and the centers are set. The cookies will still be very soft when you remove them from the oven, and that’s perfectly fine. They will firm up as they cool.
- Cooling: Once baked, remove the cookies from the oven and let them cool on the baking sheet for about 5 minutes. This allows them to set completely and prevents them from breaking when transferred. After 5 minutes, carefully transfer the cookies to a wire rack to cool completely. Enjoy them warm or at room temperature!
Following these steps will result in a batch of delightfully soft, spiced, and chocolate-filled paleo pumpkin cookies that are sure to be a hit!
Recipe Tips and Frequently Asked Questions (FAQ)
Achieving baking perfection often comes with a few helpful tips and answers to common questions. Here are some insights to ensure your paleo pumpkin cookies turn out wonderfully every time.

Storage and Freezing
Can I freeze these cookies?
Absolutely! These paleo pumpkin cookies are wonderfully freezer-friendly. Once they have completely cooled, transfer them to an airtight, resealable freezer bag or container. They can be stored in the freezer for up to 2 months. For best results, place parchment paper between layers of cookies to prevent them from sticking together. When you’re ready to enjoy them, simply thaw them at room temperature or pop them in the microwave for a few seconds for a warm, soft treat. They are surprisingly delicious straight out of the freezer too, offering a chewier texture!
How should I store leftover cookies?
Store cooled cookies in an airtight container at room temperature for up to 3-4 days. For longer freshness, you can store them in the refrigerator for up to a week. While they are delicious at room temperature, chilling them can slightly firm up their texture, which some people prefer.
Ingredient Substitutions
Can I use only almond flour or only coconut flour instead of the combination of the two?
Unfortunately, a direct one-to-one substitution of all almond flour or all coconut flour will not work in this recipe. Almond flour and coconut flour have vastly different properties. Almond flour is dense and high in fat, providing a tender crumb, while coconut flour is incredibly absorbent and requires a lot of liquid to prevent dryness. The specific ratio used in this recipe has been carefully developed to achieve the ideal soft, chewy texture and moisture balance. Swapping them out completely would drastically alter the dough’s consistency, likely resulting in a crumbly mess or an overly dry cookie. It’s best to stick to the specified blend for success.
Can I use honey or maple syrup in place of coconut sugar?
While honey and maple syrup are excellent natural sweeteners, they are liquid sweeteners. Substituting them for granular coconut sugar in this recipe would significantly increase the moisture content of the dough, making it too runny and preventing the cookies from holding their shape or baking properly. For this specific recipe, it’s essential to use a granular sweetener like coconut sugar (or brown sugar if not strictly paleo) to maintain the correct dough consistency.
Can I use butter instead of palm shortening?
Yes, if you are not strictly dairy-free, you can use unsalted butter in place of the organic palm shortening. Use the same amount. The texture might be slightly richer, but the cookies will still be delicious and moist. Ensure the butter is softened to room temperature for proper creaming.
Variations and Enhancements
Can I add other mix-ins to the cookies?
Absolutely! Feel free to customize your paleo pumpkin cookies. Great additions include chopped nuts (like pecans or walnuts) for added crunch, dried cranberries for a touch of tartness, or even a sprinkle of sea salt on top before baking to enhance the chocolate flavor. Just be mindful not to add too many additional mix-ins, as this can affect the cookie’s structure.
What if I don’t have all the individual spices?
If you don’t have individual ground cinnamon, nutmeg, and cloves, you can substitute a pre-made pumpkin pie spice blend. Use about 1.5 to 2 teaspoons of pumpkin pie spice in place of the individual spices for a similar flavor profile.
How can I make them look extra festive?
For a more decorative touch, you can add a simple paleo-friendly glaze made from powdered coconut sugar (blended in a food processor) and a touch of dairy-free milk, or sprinkle with flaky sea salt immediately after baking while the chocolate chips are still warm.
By keeping these tips and FAQs in mind, you’re well-equipped to bake a batch of perfect paleo pumpkin cookies that are sure to delight!
More Delicious Paleo and Gluten-Free Pumpkin Treats
If you’ve fallen in love with these paleo pumpkin cookies, you’ll be thrilled to discover other wonderful ways to enjoy pumpkin in a healthy, wholesome manner. Here are some more delightful pumpkin recipes that are gluten-free and often paleo-friendly:
- Paleo Pumpkin Protein Pancakes: Start your day with a stack of fluffy, protein-packed pancakes infused with pumpkin and warming spices. A perfect wholesome breakfast!
- Gluten-Free Pumpkin Muffins: These moist and tender muffins are an excellent on-the-go snack or a lovely addition to brunch. They’re packed with pumpkin goodness and classic fall flavors.
- Gluten-Free and Dairy-Free Pumpkin Pie: No fall season is complete without a classic pumpkin pie. This recipe offers a healthier, allergen-friendly version that doesn’t skimp on flavor or creamy texture.
- Vegan Pumpkin Cookies: For another delightful variation, check out my Vegan Pumpkin Cookies. They are also paleo-friendly and packed with superfoods, making them perfect as a nutritious breakfast cookie!
Exploring these recipes will keep your kitchen filled with the inviting aromas and delicious tastes of pumpkin throughout the fall season and beyond. Enjoy discovering your new favorite healthy pumpkin treats!
Paleo Pumpkin Chocolate Chip Cookies
Erin Collins
15 minutes
12 minutes
27 minutes
12 cookies
Comments
Ingredients
Wet Ingredients:
- 1/4 cup organic palm shortening or butter (for non-dairy-free)
- 2 teaspoons coconut oil softened
- 1/2 cup coconut sugar or brown sugar (for non-paleo)
- 1/2 cup canned pure pumpkin puree (not pumpkin pie filling)
- 2 large eggs
- 1 teaspoon vanilla extract
Dry Ingredients:
- 1 cup almond flour
- 3 tablespoons coconut flour
- 1 teaspoon ground cinnamon
- 1/4 teaspoon ground nutmeg
- 1/4 teaspoon ground cloves
- 1/4 teaspoon kosher salt
- 1/4 teaspoon baking soda
- 1/2 cup dairy-free chocolate chips
Instructions
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Preheat the oven to 350°F (175°C). Line a large baking sheet with parchment paper or a silicone baking mat.
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In the bowl of a stand mixer, or using a hand mixer, beat together the palm shortening, coconut oil, and coconut sugar until light and fluffy. Add the pumpkin, eggs, and vanilla, and blend until smooth and well combined. Scrape down the sides of the bowl as needed.
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In a separate bowl, sift together the almond flour, coconut flour, cinnamon, nutmeg, cloves, salt, and baking soda. Add the dry ingredients to the wet mixture and mix on low speed until just combined. Do not overmix. Stir in the chocolate chips using a spatula. The dough will appear wet.
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Scoop the cookie dough (approximately 1.5 tablespoons per cookie) onto the prepared baking sheet. With wet hands, gently flatten each cookie dough mound slightly, as they will not spread much during baking.
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Bake for 9-11 minutes, or until the edges are lightly golden and the centers are set. The cookies will still be soft when removed from the oven.
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Remove from the oven and let cool on the baking sheet for 5 minutes to firm up. Then, transfer them to a wire rack to cool completely.
Notes
Ingredient Notes:
- Pumpkin: Always use 100% pure pumpkin puree, not pumpkin pie filling, which contains added sugar and thickeners.
- Coconut Sugar: This natural sweetener provides a caramel-like flavor. Brown sugar can be used as a substitute if not strictly paleo.
- Palm Shortening: Organic palm shortening is recommended for a dairy-free and healthier fat option. Unsalted butter can be used for non-dairy-free versions.
- Chocolate Chips: Ensure you choose a dairy-free brand to keep these cookies completely dairy-free.
FAQ:
- Freezing: These cookies are freezer-friendly. Store baked cookies in a resealable bag for up to 2 months. They are delicious thawed or straight from the freezer.
- Flour Substitution: Do not substitute all almond flour or all coconut flour for the specified combination, as their properties are very different and the ratio is crucial for texture.
- Sweetener Substitution: Liquid sweeteners like honey or maple syrup are not suitable substitutes for coconut sugar in this recipe as they will make the dough too runny.
Nutrition
Per Serving (1 cookie):
- Calories: 172kcal
- Carbohydrates: 14g
- Protein: 3g
- Fat: 11g
- Saturated Fat: 4g
- Cholesterol: 38mg
- Sodium: 136mg
- Potassium: 31mg
- Fiber: 1g
- Sugar: 9g
- Vitamin A: 1765IU
- Vitamin C: 0.4mg
- Calcium: 38mg
- Iron: 0.7mg
If you give this wonderful recipe a try, please remember to leave a comment and rating below. Your feedback means a lot to me and helps other bakers discover these delicious cookies!